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Proteins limit nanoparticle dispersal: sulfate-reducing bacteria
Extracellular proteins of some sulfate-reducing bacteria limit the dispersal of nanoparticles by aggregating them.
Analysis revealed an "intimate association of proteins with spheroidal aggregates of biogenic zinc sulfide nanocrystals, an example of extracellular biomineralization. Experiments involving synthetic zinc sulfide nanoparticles and representative amino acids indicated a driving role for cysteine in rapid nanoparticle aggregation. These findings suggest that microbially derived extracellular proteins can limit the dispersal of nanoparticulate metal-bearing phases, such as the mineral products of bioremediation, that may otherwise be transported away from their source by subsurface fluid flow." (Moreau et al. 2007:1600, 1602)
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License | http://creativecommons.org/licenses/by-nc/3.0/ |
Rights holder/Author | (c) 2008-2009 The Biomimicry Institute |
Source | http://www.asknature.org/strategy/a1bc03d2aee740c44f4f38741f8a2469 |
Extremophile converts fatty-acids into energy: bacteria
Metabolic process of extremophile bacteria converts fatty acids into a variety of secondary compounds, including hydrogen, by running normal metabolism backwards.
"It survives on a food so unrewarding it needs help disposing of its waste. Eking out an existence only by turning the normal chemistry of life back to front, the bacterium Syntrophus aciditrophicus is one of the most extreme-living organisms known. Now its genome has been sequenced and is yielding clues as to how it survives. It might even help us make hydrogen from waste. Robert Gunsalus of the University of California, Los Angeles, and colleagues identified 3169 genes in Syntrophus. The bacterium performs a key part of the carbon cycle by breaking down fatty acids--used by almost no other organisms as an energy source. To do this, its genes stand normal energy-generation reactions on their head (Proceedings of the National Academy of Sciences, DOI: 10.1073/pnas.0610456104). In normal respiration, organic compounds are oxidised, and the electrons this liberates are used to drive the production of the energy-storage molecule ATP. In Syntrophus the electrons go the opposite way as the bacterium turns fatty acids into a variety of breakdown products that it feeds on, plus hydrogen and the chemical formate. It survives only with the 'help' of other bacteria that hoover up the hydrogen and formate--otherwise it could not feed. Understanding the bacterium's metabolism will 'hopefully make biohydrogen production a reality', says Gunsalus." (Hooper 2007: 12) from issue 2600 of New Scientist magazine, 21 April 2007, page 12)
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License | http://creativecommons.org/licenses/by-nc/3.0/ |
Rights holder/Author | (c) 2008-2009 The Biomimicry Institute |
Source | http://www.asknature.org/strategy/9b8f5568cb4410f9924e3973bfa628b3 |
Hairlike extensions responsible for movement: bacteria
Some bacteria move by attaching and then retracting pili through their outer membranes.
"Gliding motion across surfaces, usually with slime--whether or not by the same scheme--occurs in procaryotic organisms (bacteria and their kin) as well. It's based on either of two mechanisms. Bacteria are often covered with tiny hairs, pili; retraction of one type (designated IV) through their outer membranes can move them around. Alternatively, they can secrete carbohydrate slime rearward to get a push (Kaiser 2000; Merz and Forest 2002)." (Vogel 2003:450)
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License | http://creativecommons.org/licenses/by-nc/3.0/ |
Rights holder/Author | (c) 2008-2009 The Biomimicry Institute |
Source | http://www.asknature.org/strategy/7fdabe90620b43e83485348c1c5e8480 |
Shape-shifting aids swimming: bacteria
Body of bacteria moves through water by shape-shifting.
"On the scale of a bacterium, water is as viscous as treacle. This makes swimming difficult because a simple symmetrical stroke gets you nowhere: the recovery stroke pushes you as far back as the first part of the stroke pulled you forward. So these bacteria adopt different geometrical shapes during the first and second parts of the stroke to maximise the forward movement. Swimming robots and moving parts in nanomachines are already engineered in this way." (Hogan 2003:24)
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License | http://creativecommons.org/licenses/by-nc/3.0/ |
Rights holder/Author | (c) 2008-2009 The Biomimicry Institute |
Source | http://www.asknature.org/strategy/7e3f184b653112f30dd89911b3eb7145 |
Bacteria are any of a very large group of single-celled microorganisms that display a wide range of metabolic types, geometric shapes and environmental habitats—and niches—of occurrence. Normally only several micrometers in length, bacteria assume the form of spheres, rods, spirals and other shapes. Bacteria are found in a very broad gamut of habitats; for example, bacterial extremophiles that thrive in such places as hot springs, arctic environments, radioactive waste, deep sea oil seeps, deep Earth crustal environments, hypersaline ponds and within other living organisms. There are approximately 50 million bacterial organisms in a single gram of typical surface soil. The worldwide bacterial biomass exceeds that of all plants and animals on Earth. However, the majority of bacteria have not yet been characterised. Read more...
License | http://creativecommons.org/licenses/by/3.0/ |
Rights holder/Author | Tracy Barbaro, Tracy Barbaro |
Source | http://www.eoearth.org/view/article/150368/ |
Membranes avoid freezing: bacteria
Membranes of some microbes continue to allow diffusion at cold temperatures by having a special fatty composition that keep them relatively fluid.
"Bacteria have two skins, an outer one which is a stiff molecular mesh, through which molecules of food and water can diffuse fairly easily, and an inner one, elastic and membranous, which has to be very selectively permeable, so that nutrients can get in but the internal substances of the cell do not leak out. (This, by the way, is the skin which ice damages lethally; the outer layer is tougher and serves to keep out big molecules and to sustain the cell's shape). The cell membrane, as it is called, includes a lot of fat in its structure, and its permeability is very much influenced by fluidity of that fat…Psychrophiles have cell membranes of a special fatty composition, such that they are relatively fluid at temperatures near freezing point--and again they pay a price: their membranes become too fluid, and begin to melt, when the environment warms to the temperatures that most bacteria prefer." (Postgate 1994:28)
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License | http://creativecommons.org/licenses/by-nc/3.0/ |
Rights holder/Author | (c) 2008-2009 The Biomimicry Institute |
Source | http://www.asknature.org/strategy/73eda7063169094a09ebe13cb8829582 |
In Great Britain and/or Ireland:
Bacterial predator
Aplectana is predator of Bacteria
Bacterial predator
Cosmocerca is predator of Bacteria
Bacterial predator
Entamoeba muris is predator of Bacteria
Bacterial predator
larva of Graphidium strigosum is predator of Bacteria
Bacterial predator
larva of Nematospiroides dubius is predator of Bacteria
Bacterial predator
Syphacia obvelata is predator of Bacteria
Bacterial predator
Syphacia stroma is predator of Bacteria
Bacterial predator
larva of Trichostrongylus retortaeformis is predator of Bacteria
License | http://creativecommons.org/licenses/by-nc-sa/3.0/ |
Rights holder/Author | BioImages, BioImages - the Virtual Fieldguide (UK) |
Source | http://www.bioimages.org.uk/html/Bacteria.htm |
By-products inhibit yeast and fungi: Pseudomonas aeruginosa
The metabolism of Pseudomonas aeruginosa produces products that inhibit yeast and fungal growth via the conversion of unsaturated fatty acids.
"Bioconversion is a “green” technology that converts fatty acids into entirely new chemical compounds with antimicrobial, industrial or biomedical properties. The bioconversion reactions by Pseudomonas aeruginosa PR3 have been cited extensively among microbial systems that produce mono-, di- and tri-hydroxy fatty acid derivatives from unsaturated fatty acids (Kuo et al., 1998). Strain PR3, isolated from a waste water stream on a pig farm in Morton, IL, USA was found to convert oleic acid to a novel compound, 7,10-dihydroxy-8(E)-octadecenoic acid (DOD), which inhibits the laboratory growth of Candida albicans, a yeast that sometimes causes thrush and other infections in humans (Hou and Bagby, 1991). This strain was also found to convert ricinoleic acid to another novel compound 7,10,12-trihydroxy-8(E)-octadecenoic acid (TOD), which inhibits the rice blast fungus, raising the prospect for a biological fungicide against this pathogen (Kuo et al., 2001). These recently described compounds, from the microbial conversion of unsaturated fatty acids, are potential value-added products that will inhibit such pathogens." (Bajpai et al. 2008:136)
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License | http://creativecommons.org/licenses/by-nc/3.0/ |
Rights holder/Author | (c) 2008-2009 The Biomimicry Institute |
Source | http://www.asknature.org/strategy/5c9d0f55174969fff703b3faf1efe083 |
bacteria (Benthic bacteria) is prey of:
Streblospio
Capitella
Manayunkia
Littorina
Modiolus
Sesarma
Uca
Chironomidae
protozoa
Rotifera
Nematoda
zooflagellates
ciliates
meroplankton
Appendicularia
Doliolidae
Calanoida
Oligochaeta
macrobenthos
Actinopterygii
Bosmina
Chydorus
Tropocyclops
Copepoda
Tubificidae
Paraplectonema
Limnocythere
Synchaeta
Polyarthra
Conochilus
Daphnia
Eudiaptomus
benthic herbivores
Decapoda
detritivorous invertebrates
detritus
bacterial and fungal feeders
Diptera
Mysidacea
Ostracoda
Euphausiacea
Hyperiidea
Cyclopoida
Infusoria
Radiolaria
Calanus
Acartia
Oithona-Oncaea type
Euchaeta
Centropages
Medusae
Ctenophora
Moina
Diaptomus
Insecta
Cyclops
deposit feeders
zooplankton
filter feeders
Holopedium
Limnephilus
Eiseniella
Mystacides
Lepidurus
Leptophlebia
Nemoura
Gammarus
Tripteroides
Culex
Uranotaenia
bacteria
Crustacea
Polychaeta
Bivalvia
Cumacea
Floridichthys carpio
Lophogobius cyprinoides
microzooplankton
gelatinous zooplankton
Caracolus caracolla
Psocoptera
Amphitritidae
Pectanaridae
Hylina veliei
Syllidae
Orbiniidae
Paraonidae
Spionidae
Cirratulidae
Capitellidae
Maldanidae
Aricidea
Jaspidella jaspidea
Nemertines
Nereidae
Hesionidae
Glyceridae
Onuphidae
Lagodon rhomboides
Laridae
Cyprinodon variegatus
Anatidae
Fundulus confluentus
Fundulus similis
Adinia xenica
sediment POC
Elasmopus levis
Lembos rectangularis
Acunmindeutopus naglei
Melita
Synchelidium
Ampithoe longimana
Cymadusa compta
Batea catharinensis
Listriella barnardi
Lysianopsis alba
Caprella penantis
Microfauna
meiofauna
Amphipoda
Tanaeidae
Mysidopsis
Ampelisca
Corophium
Cerapus tubularis
Gammarus mucronatus
Pagurus
Pagurus maclaughlinae
Pinixia floridana
Neopanope texana
Ophioderma brevispinum
Processa bermudiensis
Penaeus duoarum
Palaemonetes floridanus
Acteon punctostriatus
Cadulus carolinesis
Swartziella catesbyana
Acetocina candei
Truncatella pulchella
Nassarius vibex
Olivella mutica
Haminoea succinea
Based on studies in:
USA: Georgia (Marine)
USA: Maine (Lake or pond)
Scotland (Lake or pond)
New Zealand (Grassland)
Russia (Lake or pond)
South Africa (Desert or dune)
Finland (Lake or pond, Pelagic)
Pacific (Marine, Tropical)
Malaysia, W. Malaysia (Plant substrate)
unknown (Soil)
USA: Florida, Everglades (Estuarine)
Quebec (Lake or pond, Pelagic)
USA: Florida (Estuarine)
Malaysia (Swamp)
Netherlands: Wadden Sea, Ems estuary (Estuarine)
South Africa, Southwest coast (Marine)
Norway: Oppland, Ovre Heimdalsvatn Lake (Lake or pond)
Puerto Rico, El Verde (Rainforest)
Austria, Neusiedler Lake (Lake or pond)
Japan (Forest)
USA: Alaska (Tundra)
This list may not be complete but is based on published studies.
License | http://creativecommons.org/licenses/by/3.0/ |
Rights holder/Author | Cynthia Sims Parr, Joel Sachs, SPIRE |
Source | http://spire.umbc.edu/fwc/ |
Storing carbon and energy: bacteria
Bacteria store carbon and energy by synthesizing a polymer known as poly(beta-hydroxybutyrate) or PHB.
"Geoffrey Coates and others at Cornell University have discovered a highly efficient chemical route for synthesis of a polymer known as poly(beta-hydroxybutyrate) or PHB, a thermoplastic polyester found in nature, particularly in some bacteria. Bacteria use it as a storage form of carbon and energy. According to Coates's website...'Poly(hydroxyalkanoate)s (PHAs) are naturally-occurring biodegradable polyesters that are presently commercially made by fermentation. We are working to develop an alternate route that consists of carbonylation of epoxides to beta-lactones, followed by ring-opening polymerization to yield PHAs. A key advance in our lab regarding this strategy was the discovery of epoxide carbonylation catalysts consisting of Lewis-acidic cations in combination with Co(CO)4 anions. These highly active and selective catalysts carbonylate a wide range of epoxides and lactones to their corresponding lactones and anhydrides. Current work focuses on the elucidation of their mechanisms of operations, and the development of more active and stereoselective variants of these catalysts.'" (Courtesy of the Biomimicry Guild)
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License | http://creativecommons.org/licenses/by-nc/3.0/ |
Rights holder/Author | (c) 2008-2009 The Biomimicry Institute |
Source | http://www.asknature.org/strategy/5afadfe7b7de3709b12bfb90aaaae7fa |